ci(codium): added organization ID for api key

tonywu1999 commented 2 weeks ago

User description

Checklist Before Requesting a Review

[x] I have read the MSstats contributing guidelines
[x] My changes generate no new warnings
[x] Any dependent changes have been merged and published in downstream modules
[x] Ran styler::style_pkg(transformers = styler::tidyverse_style(indent_by = 4))
[x] Ran devtools::document()

PR Type

configuration changes

Description

Added the OPENAI_ORG environment variable to the Codium PR Agent configuration in the GitHub Actions workflow file.
This change specifies the organization ID required for the API key used in the workflow.

Changes walkthrough 📝

Relevant files

Configuration changes

codium-pr-agent.yml

Add organization ID to Codium PR Agent configuration

.github/workflows/codium-pr-agent.yml

Added OPENAI_ORG environment variable with a specific organization ID.

Updated the configuration for the Codium PR Agent action.

+1/-0

💡 PR-Agent usage: Comment /help "your question" on any pull request to receive relevant information

github-actions[bot] commented 2 weeks ago

PR Reviewer Guide 🔍

Here are some key observations to aid the review process:

⏱️ Estimated effort to review: 1 🔵⚪⚪⚪⚪

🧪 No relevant tests

🔒 No security concerns identified

⚡ No major issues detected

github-actions[bot] commented 2 weeks ago

PR Code Suggestions ✨

Explore these optional code suggestions:

Category	Suggestion	Score
Security	Replace hardcoded values with secrets to improve security ___ Replace the hardcoded organization ID with a GitHub secret to enhance security and maintainability. [.github/workflows/codium-pr-agent.yml [18]](https://github.com/Vitek-Lab/MSstatsBioNet/pull/21/files#diff-b084715c5365a791d1a046ff6af84c19d8c4f1f583702ec0db5572dbd03314dfR18-R18) ```diff -OPENAI_ORG: "org-pv3HgXj5hWF1va6Fb4s9hxNV" +OPENAI_ORG: ${{ secrets.OPENAI_ORG }} ``` Suggestion importance[1-10]: 9 Why: The suggestion to replace the hardcoded organization ID with a GitHub secret significantly enhances security and maintainability by preventing sensitive information from being exposed in the codebase.	9

codecov-commenter commented 2 weeks ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 88.28%. Comparing base (b4692ab) to head (69e6eaa).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## devel #21 +/- ## ======================================= Coverage 88.28% 88.28% ======================================= Files 3 3 Lines 111 111 ======================================= Hits 98 98 Misses 13 13 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

Vitek-Lab / MSstatsBioNet