I am trying to run the MSstatsShiny using the development version but always get an error with the annotation file, I have used the same annotation file that I have used for the command line and it worked nicely:
The error I get is the following:
Warning: Error in .checkAnnotation: ** Columns Run, Condition, BioReplicate missing in the annotation. Please check the annotation file.
The annotation.txt is a tab-delimited file with the header: Run, Condition, Bioreplicate, here are the first 3 lines as an example:
Run Condition BioReplicate
48 AP_10_DIA 150_40 min grad_10-18-2023_1_6291 AP_10 AP_10
49 AP_10_DIA 150_40 min grad_10-19-2023_1_6308 AP_10 AP_10
50 AP_10_DIA 150_40 min grad_10-19-2023_1_6323 AP_10 AP_10
Hi,
I am trying to run the MSstatsShiny using the development version but always get an error with the annotation file, I have used the same annotation file that I have used for the command line and it worked nicely:
The error I get is the following:
The
annotation.txt
is a tab-delimited file with the header: Run, Condition, Bioreplicate, here are the first 3 lines as an example: