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Vitek-Lab / MSstatsShiny

R-Shiny GUI integrated with the MSstats package family
https://www.msstatsshiny.com
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don't read the annotations file #86

Open jfertaj opened 8 months ago

jfertaj commented 8 months ago

Hi,

I am trying to run the MSstatsShiny using the development version but always get an error with the annotation file, I have used the same annotation file that I have used for the command line and it worked nicely:

The error I get is the following:

Warning: Error in .checkAnnotation: ** Columns Run, Condition, BioReplicate missing in the annotation. Please check the annotation file.

The annotation.txt is a tab-delimited file with the header: Run, Condition, Bioreplicate, here are the first 3 lines as an example:

Run Condition   BioReplicate
48 AP_10_DIA 150_40 min grad_10-18-2023_1_6291  AP_10   AP_10
49 AP_10_DIA 150_40 min grad_10-19-2023_1_6308  AP_10   AP_10
50 AP_10_DIA 150_40 min grad_10-19-2023_1_6323  AP_10   AP_10
devonjkohler commented 7 months ago

Hi @jfertaj

The application expects the annotation file to be comma delimited. Can you try to save this as a csv and reupload?

I will look into adding a delim selector for the annotation file

Devon