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Vitek-Lab / MSstatsTMTPTM

R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling
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raw.PTM problem #2

Open miaohaofei opened 3 years ago

miaohaofei commented 3 years ago

hello, vitek I have a problem for the raw.ptm, the protein name format: protein_12_S345, S345 is PTM site, but what the 12 strand for? thanks very much !

devonjkohler commented 3 years ago

Hello, The 12 is just just part of the protein name in the data. So the protein name is protein_12 and the site name is S345. The data is masked so it represents a real protein but with a fake name. Devon