Parallel Processing cannot find library

Vivianstats / scImpute

Accurate and robust imputation of scRNA-seq data

https://www.nature.com/articles/s41467-018-03405-7

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Parallel Processing cannot find library #18

Open gouinK opened 5 years ago

gouinK commented 5 years ago

Greetings,

I am running this package on a computing cluster in parallel, and it keeps throwing an error like this one: "worker initialization failed: there is no package called 'penalized." Since I am running this on a cluster, I have my own path that contains all of my installed packages. How can I ensure that the path to my packages is passed on to all of the workers? Thanks!

Vivianstats commented 5 years ago

Hello gouinK,

I've never seen this error before, and it's difficult to diagnose the problem with the information you provided. I think you can first check if the penalized package is correctly installed in your environment and if R can load it without any problems?