Vivianstats / scImpute

Accurate and robust imputation of scRNA-seq data
https://www.nature.com/articles/s41467-018-03405-7
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Error in parslist[valid_genes, , drop = FALSE] : subscript out of bounds #38

Open josruirod opened 1 year ago

josruirod commented 1 year ago

Hi, Since support seems to have been dropped, it seems like a long shot, but any suggestion regarding this error would be much appreciated. Thanks anyone!

[1] "reading in raw count matrix ..." [1] "number of genes in raw count matrix 36601" [1] "number of cells in raw count matrix 43320" [1] "reading finished!" [1] "imputation starts ..." [1] "searching candidate neighbors ... " [1] "calculating cell distances ..." starting worker pid=14864 on localhost:11838 at 00:22:19.511 starting worker pid=14858 on localhost:11838 at 00:22:19.513 starting worker pid=14861 on localhost:11838 at 00:22:19.514 starting worker pid=14856 on localhost:11838 at 00:22:19.525 starting worker pid=14865 on localhost:11838 at 00:22:19.526 starting worker pid=14863 on localhost:11838 at 00:22:19.553 starting worker pid=14862 on localhost:11838 at 00:22:19.563 starting worker pid=14855 on localhost:11838 at 00:22:19.564 starting worker pid=14853 on localhost:11838 at 00:22:19.565 starting worker pid=14852 on localhost:11838 at 00:22:19.565 starting worker pid=14866 on localhost:11838 at 00:22:19.576 starting worker pid=14857 on localhost:11838 at 00:22:19.579 starting worker pid=14854 on localhost:11838 at 00:22:19.591 starting worker pid=14860 on localhost:11838 at 00:22:19.599 starting worker pid=14859 on localhost:11838 at 00:22:19.601 [1] "estimating dropout probability for type 1 ..." [1] 2000 [1] 4000 [1] 6000 [1] 8000 [1] 10000 [1] 12000 [1] 14000 [1] 16000 [1] 18000 [1] 20000 [1] 24000 [1] 26000 [1] 30000 [1] 32000 [1] 36000 [1] "searching for valid genes ..." Error in parslist[valid_genes, , drop = FALSE] : subscript out of bounds