WDscholia / scholia

Wikidata-based scholarly profiles
https://scholia.toolforge.org
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Make disease descriptions more useful #851

Open fehrhart opened 4 years ago

fehrhart commented 4 years ago

Some wild ideas to explore

  1. add genetic association to disease pages
  2. add phenotype associations to disease pages - first, query HPO terms for diseases and add them to the Wikidata page of the disease
  3. add genetic variants associated with disease to disease pages - first, query Disgenet or ClinVar for variant-disease associations and add them to the Wikidata page of the disease
  4. add list of authors who published about this disease
fehrhart commented 4 years ago
  1. add genetic association to disease pages

SELECT ?gene ?geneLabel WHERE { SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } ?gene wdt:P31 wd:Q7187. ?gene wdt:P2293 wd:{{q}}. } Order by ?geneLabel

fehrhart commented 4 years ago

4.1 Top 10 list of most recent publications

SELECT ?scholarly_article ?scholarly_articleLabel ?publication_date WHERE { SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } ?scholarly_article wdt:P31 wd:Q13442814; wdt:P921 wd:{{q}}; wdt:P577 ?publication_date. } ORDER by desc(?publication_date) LIMIT 10

fehrhart commented 4 years ago

Update

TS404 commented 4 years ago

Looking at scholia/disease/Q84263196, I noticed that the section "Possibly related diseases" is pretty misleading (based on symptom overlap). Options:

  1. At least rename to "Diseases with similar symptoms"
  2. Better might be to rethink what alternative queries might be biomedically more useful

Additional conversation at Wikidata_talk:WikiProject_COVID-19.