Create examples for one file per sample and multiple samples per file

[rowlandm]

One file per sample is WES T-N. Multiple samples per file is scRNASeq.

[rowlandm]

Create examples in database already and examples where you are "loading" it into the database.

[rowlandm]

create a single cell RNASeq counts file with genes in the rows and samples on the columns

[rowlandm]

create multiple fastq files for samples that have file names that aren't changed from the sequencer eg. AGRF or AGF.

[rowlandm]

• Projects can be created manually
• Datasets can be created manually
• Patients should be created via a REDCap load or via REDCap API
• Samples should be created via REDCap or some csv file
• Raw data should be created via reading files in a directory and import.

[rowlandm]

Example of the schema