search

WGLab / DeepMod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
Other
97 stars 35 forks source link

Does the model support using move table? #33

Closed vahidAK closed 3 years ago

vahidAK commented 4 years ago

Hi @liuqianhn I realized that DeepMod supports move table. Does it consistent with your trained model?, as you trained them on events detected by Albacore I assume that the segmentation and event detection algorithm of guppy might have some differences with albacore.

Thanks, Vahid.

liuqianhn commented 4 years ago

@vahidAK DeepMod supports move table now, but we do not have the re-trained models on the move table so far. I think that the segmentation of event detections in guppy and albacore might be different but would not have a significant difference. However, I have no data to confirm this yet. Please feel free to share what you find if you test trained models on move table. Thanks.

liuqianhn commented 3 years ago

Closed due to no recent response. Feel free to reopen it if you need more help.