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WGLab / DeepMod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
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"python bin/DeepMod.py detect" produces error #41

Closed ViHammer closed 3 years ago

ViHammer commented 3 years ago

The command python bin/DeepMod.py detect, mentioned under "Install DeepMod" throws a TypeError:

(mdeepmod) /.../DeepMod$ python bin/DeepMod.py detect
No mod file is provided. The default one is used
Traceback (most recent call last):
  File "bin/DeepMod.py", line 383, in <module>
    args.func(args);
  File "bin/DeepMod.py", line 140, in mDetect
    moptions['modfile'] = ('{}/lib/python{}.{}/site-packages/DeepMod/train_deepmod/rnn_P90wd%d_f53/mod_train_P90wd%d_f53' % (sys.prefix,sys.version_info.major,sys.version_info.minor, moptions['windowsize'], moptions['windowsize']))
TypeError: %d format: a number is required, not str
liuqianhn commented 3 years ago

@ViHammer My fault. I made the correction. Pleased download the updated "bin/DeepMod.py".

ViHammer commented 3 years ago

@ViHammer My fault. I made the correction. Pleased download the updated "bin/DeepMod.py".

Works now!