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WGLab / DeepMod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
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what should I do if there are too many methylation sites detected? #47

Open chenchen-eng opened 2 years ago

chenchen-eng commented 2 years ago

Hello teacher, what should I do if there are too many methylation sites detected? Tens of thousands of sites have been detected on each chromosome.Thanks teacher

liuqianhn commented 2 years ago

@chenchen-eng Thanks for being interested in DeepMod. It depends on your genomes. If you want to have more reliable methylation sites, you can use a threshold of methylation percentage to have a smaller subset but more confident modification sites.