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WGLab / DeepMod

DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
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methylation calling in non-CpG context (CHG and CHH) #57

Open yusmiatiliau opened 1 year ago

yusmiatiliau commented 1 year ago

Hello there, I wonder if DeepMod can call methylation in CHG and CHH context too in plant samples? Apologise if it is already there, and I just totally miss it. And if not, is there any plan in the near future to include this?

Thanks a lot

liuqianhn commented 1 year ago

@yusmiatiliau DeepMod is NOT trained with methylations in CHG and CHH. For the future plan, please post an issue in DeepMod2.

yusmiatiliau commented 1 year ago

@liuqianhn, thank you very much for your prompt reply. I will post an issue in DeepMod2, and hopefulyl plant methylation model can be included in future development.