Open bakeronit opened 1 year ago
@bakeronit It seems that there is an error in
for raw_data in sp_param['f5reader'][fast5_rawReads].values(): pass;
sp_param['raw_attributes'] = dict(raw_data.attrs.items())
sp_param['raw_signals'] = raw_data['Signal'][()]
You can either use DeepMod2 or share the fast5 file for testing. Thanks.
Thanks for the reply. I found the reason might be the compress format of my fast5 is vbz instead of gzip. Install ont-vbz-hdf-plugin
solves the problem.
Although, I got new error of no events data after ... it might be some basecalling issue
@bakeronit Thank you for sharing the solution. Feel free to share other errors if you want.
Hi all,
I am using DeepMod to detect 5mC. I had converted multi-fast5 files into single fast5 files. and each file looks like:
It seems there are Signal data in the file ,however, I got errors:
Error!!! No Raw_reads/Signal data /Raw/Reads xxxx
Can you help me with the error? Thank you.
Attached is the whole output. stdout.txt