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WGLab / DeepMod2

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
MIT License
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Why doesn't Deepmod2 have a 6mA detection model, will it be developed subsequently? #2

Closed fire-activate closed 9 months ago

fire-activate commented 2 years ago

Why doesn't Deepmod2 have a 6mA detection model, will it be developed subsequently?

kaichop commented 2 years ago

Yes, it is being planned, after the 5mC model is optimized to our satisfaction.

On Mon, Jul 18, 2022 at 11:12 PM fire-activate @.***> wrote:

Why doesn't Deepmod2 have a 6mA detection model, will it be developed subsequently?

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fire-activate commented 2 years ago

Thank you for your Response

DelphIONe commented 1 year ago

We can use DeepMod (not DeepMod2) if we want to detect 6mA ?

kaichop commented 1 year ago

Yes, for deepmod the data needs to be R9 and called in albacore so this can be a challenge for some users.

On Thu, Feb 16, 2023 at 12:39 PM DelphIONe @.***> wrote:

We can use DeepMod (not DeepMod2) if we want to detect 6mA ?

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