About the compatiblity of Dorado basecalling model

WGLab / DeepMod2

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

MIT License

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About the compatiblity of Dorado basecalling model #28

Open gxAlan233 opened 1 month ago

gxAlan233 commented 1 month ago

I have a bam file which was basecalled by Dorado, and I try to run deepmod2 on it using the latest model bilstm_r10.4.1_5khz_v4.3. However the Dorado basecalling used for that bam file is v5.0 rather than v4.3. Is it still OK when the Dorado basecalling version is higer than deepmod2's model? Or do I have to basecall it again using v4.3.0 Dorado basecalling?

umahsn commented 1 month ago

Hi, we are training new models for v5 of Dorado. We will have the models uploaded here after we test in a few days.