Closed ZhenhongJiang closed 6 years ago
Please update the intervar by:
https://github.com/WGLab/InterVar/archive/master.zip
Best,
Quan LI, Ph.D
mailto:leequan@gmail.com leequan@gmail.com
mailto:Quan.Li@uhnresearch.ca Quan.Li@uhnresearch.ca
http://www.quanli.tk http://www.quanli.tk
From: ZhenhongJiang [mailto:notifications@github.com] Sent: Wednesday, January 31, 2018 10:27 PM To: WGLab/InterVar InterVar@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [WGLab/InterVar] ValueError: could not convert string to float: '.' (#23)
Hi,when I run the example in config.ini with this command: python InterVar.py -c config.ini I got the following error. The version of python and ANNOVAR on my computer are 3.5.2 and 2017-07-17 respectively.
Notice: Begin the variants interpretation by InterVar Traceback (most recent call last): File "Intervar.py", line 2083, in main() File "Intervar.py", line 2052, in main sum2=my_inter_var(annovar_outfile) File "Intervar.py", line 1805, in my_inter_var intervar_bp=assign(BP,line,Freqs_flgs,Funcanno_flgs,Allels_flgs) File "Intervar.py", line 1680, in assign BP7=check_BP7(line,Funcanno_flgs,Allels_flgs) File "Intervar.py", line 1601, in check_BP7 if float(cls[Funcanno_flgs['GERP++_RS']]) <= float(cutoff_conserv) or cls[Funcanno_flgs['GERP++_RS']] == '.' : ValueError: could not convert string to float: '.'
Can you help me? Thanks.
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Thank you very much. Everything works fine according to your advice. Best wishes,
Zhenhong Jiang, PhD
Jiangxi Province Key Laboratory of Molecular Medicine
Email: jxzhjiang@163.com
在 2018年2月1日,上午11:30,Quan LI notifications@github.com 写道:
Please update the intervar by:
https://github.com/WGLab/InterVar/archive/master.zip
Best,
Quan LI, Ph.D
mailto:leequan@gmail.com leequan@gmail.com
mailto:Quan.Li@uhnresearch.ca Quan.Li@uhnresearch.ca
http://www.quanli.tk http://www.quanli.tk
From: ZhenhongJiang [mailto:notifications@github.com] Sent: Wednesday, January 31, 2018 10:27 PM To: WGLab/InterVar InterVar@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [WGLab/InterVar] ValueError: could not convert string to float: '.' (#23)
Hi,when I run the example in config.ini with this command: python InterVar.py -c config.ini I got the following error. The version of python and ANNOVAR on my computer are 3.5.2 and 2017-07-17 respectively.
Notice: Begin the variants interpretation by InterVar Traceback (most recent call last): File "Intervar.py", line 2083, in main() File "Intervar.py", line 2052, in main sum2=my_inter_var(annovar_outfile) File "Intervar.py", line 1805, in my_inter_var intervar_bp=assign(BP,line,Freqs_flgs,Funcanno_flgs,Allels_flgs) File "Intervar.py", line 1680, in assign BP7=check_BP7(line,Funcanno_flgs,Allels_flgs) File "Intervar.py", line 1601, in check_BP7 if float(cls[Funcanno_flgs['GERP++_RS']]) <= float(cutoff_conserv) or cls[Funcanno_flgs['GERP++_RS']] == '.' : ValueError: could not convert string to float: '.'
Can you help me? Thanks.
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Hi,when I run the example in config.ini with this command: python InterVar.py -c config.ini I got the following error. The version of python and ANNOVAR on my computer are 3.5.2 and 2017-07-17 respectively.
Notice: Begin the variants interpretation by InterVar Traceback (most recent call last): File "Intervar.py", line 2083, in
main()
File "Intervar.py", line 2052, in main
sum2=my_inter_var(annovar_outfile)
File "Intervar.py", line 1805, in my_inter_var
intervar_bp=assign(BP,line,Freqs_flgs,Funcanno_flgs,Allels_flgs)
File "Intervar.py", line 1680, in assign
BP7=check_BP7(line,Funcanno_flgs,Allels_flgs)
File "Intervar.py", line 1601, in check_BP7
if float(cls[Funcanno_flgs['GERP++_RS']]) <= float(cutoff_conserv) or cls[Funcanno_flgs['GERP++_RS']] == '.' :
ValueError: could not convert string to float: '.'
Can you help me? Thanks.