WGLab / InterVar

A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
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Error downloading database from annovar #84

Open TereLaguinge opened 2 years ago

TereLaguinge commented 2 years ago

Hi! I get this error when running InterVar:

image

It can't seem to find the annotation database: http://www.openbioinformatics.org/annovar/download/hg38_ensGene.txt.gz Do you know what I can do about it or how can I solve it? Thanks in advance for your help!

TereLaguinge commented 2 years ago

If I try downloading the database first, I get this error:

image
quanliustc commented 2 years ago

This seems like Annovar database issue, these files are not ready @kaichop

Best,

Quan LI, Ph.D

@.***

http://www.quanli.org

kaichop commented 2 years ago

Please try download again. It should work now.

On Mon, Aug 15, 2022 at 1:20 PM Quan LI @.***> wrote:

This seems like Annovar database issue, these files are not ready @kaichop

Best,

Quan LI, Ph.D

@.***

http://www.quanli.org

— Reply to this email directly, view it on GitHub https://github.com/WGLab/InterVar/issues/84#issuecomment-1215428264, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNG3OARBGCYWX4X75RADI3VZJ36XANCNFSM56S32DBA . You are receiving this because you were mentioned.Message ID: @.***>

TereLaguinge commented 2 years ago

Great! Thank you!

yangyxt commented 2 years ago

Hello. I encounter the same issue with rmsk. image

Pls suggest a solution when convenient. Very appreciated for your work.

kaichop commented 1 year ago

I replied your question in the other repository for ANNOVAR. You need to remove "-webfrom annovar" from command line because it is not an ANNOVAR-provided database.

On Tue, Aug 23, 2022 at 7:20 AM yxt @.***> wrote:

Hello. I encounter the same issue with rmsk. [image: image] https://user-images.githubusercontent.com/40780228/186145307-ff4829dd-96d9-47dc-837a-af65ed60f04e.png

Pls suggest a solution when convenient. Very appreciated for your work.

— Reply to this email directly, view it on GitHub https://github.com/WGLab/InterVar/issues/84#issuecomment-1223925776, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNG3OCUO7MKK6FUXNUWU63V2SXXBANCNFSM56S32DBA . You are receiving this because you were mentioned.Message ID: @.***>