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WGLab / LIQA

Long-read Isoform Quantification and Analysis
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Output file explanation #13

Closed gmoneyomics closed 3 months ago

gmoneyomics commented 2 years ago

Hi,

Could you please explain the "geneDASResults" file? The readme says the following:

    "geneDASResults" file: Gene-based test results file with 3 columns:
        • Column 1: gene name
        • Column 2: test P-Value
        • Column 3: Hellinger distance which measures the splicing difference between two conditions for a gene in terms of isoform relative abundances

However the file I am getting only has two columns

RNLS    0.327411022732461
LOC115598243    0.0449462797534785
CHD9    0.00752205014986429

Is the second column the p-value?

Thank you,

Ariel

agouru55 commented 3 months ago

Yes, this represents the P-Value. The Usage page has more clarification on this value.