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WGLab / LIQA

Long-read Isoform Quantification and Analysis
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what is ReadPerGene_corrected? #25

Closed zhanglab2008 closed 1 year ago

zhanglab2008 commented 1 year ago

Hi team, I wanted to compare the result from LIQA with the result from other tools. I have difficulty in understanding the ReadPerGene_corrected in the output file. What exactly is ReadPerGene_corrected and how to convert this value to TPM or raw count? I can't find any information re: how the ReadPerGene_corrected was calculated. Much appreciated!

huyustats commented 1 year ago

Hi,

Correction here means bias correction in methods part. We treat this corrected count as read count in TPM calculation. Thanks!