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WGLab / LIQA

Long-read Isoform Quantification and Analysis
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Issue with novel mode output header #42

Closed spvensko closed 1 month ago

spvensko commented 2 months ago

The output file header for the novel mode seems to be incorrect. Specifically, it appears to be the same header used in the quantify mode which isn't meaningful for novel outputs:

head HCC1395-Pt01-ar-711.liqa_novel_isos 
GeneName        IsoformName     ReadPerGene_corrected   RelativeAbundance       infor_ratio
AC090197.1      chr8    +       23336170        23366125        ENST00000519692.1,ENST00000517420.1,
AC090197.1      chr8    +       23336170        23336206        0,1,
AC090197.1      chr8    +       23336207        23337457        1,1,
AC090197.1      chr8    +       23341025        23341149        1,1,
AC090197.1      chr8    +       23341150        23341536        0,1,
AC090197.1      chr8    +       23363125        23366125        1,0,
LINC02774       chr1    +       243917401       244047317       ENST00000440494.1,ENST00000652928.1,
LINC02774       chr1    +       243917401       243917449       1,0,
LINC02774       chr1    +       243917450       243917526       1,1,
agouru55 commented 1 month ago

It should now be corrected to the correct header, thanks for pointing this out!