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WGLab / LIQA

Long-read Isoform Quantification and Analysis
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assign reads to transcript #7

Closed enovoa closed 3 months ago

enovoa commented 3 years ago

Hello! Thanks for making this software available. I was wondering if there is some way to obtain the assignments of readIDs to transcripts that are done by LIQA? Thanks in advance! Eva

huyustats commented 3 years ago

Hi @enovoa ,

Thanks for your interests in using LIQA. Read isoform compatibility matrix is a intermediate information of LIQA. Some reads are assigned to multiple isoforms due to 3' bias. Therefore, LIQA does not output this information directly. Thanks!

bernicegu313 commented 2 years ago

Hi@huyustats Hello! Thanks for making this software available。 I have a question，Is the quantitative result of the corrected full-length transcript? Could this software be used to quantify the new transcripts?

huyustats commented 2 years ago

Hi @bernicegu313, thanks for your interests in LIQA. Yes, the corrected estimation is the result. LIQA can quantify new transcripts when these transcripts are annotated in refgene file. Thanks!