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WGLab / LongReadSum

MIT License
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Add QC for BAM with base modification tags #52

Closed jonperdomo closed 2 months ago

jonperdomo commented 4 months ago

Summarize epigenetic modification (methylation) information in BAM files with modified base tags (e.g. from WGS fast5 data with Guppy 5mC base calling mode, dorado, and pacbio revio).

jonperdomo commented 4 months ago

ONT official documentation: https://github.com/nanoporetech/dorado/blob/release-v0.7/documentation/SAM.md#modified-base-tags

They recommend using modkit for parsing.