jonperdomo
commented
2 months ago Updates included:
-
Fix an error with read length histogram binning labels:
-
Update base modification statistics to report raw counts for modified bases and modifications in CpG sites
- Results for total modified CpG sites in the forward and reverse strand are identical to those produced by modkit command:
modkit pileup $input_bam $output_txt --ref $ref_genome --filter-threshold 0.8 --cpgfor the previously analyzed file (PR https://github.com/WGLab/LongReadSum/pull/53#issuecomment-2181485043)
- Results for total modified CpG sites in the forward and reverse strand are identical to those produced by modkit command:
Revisions and updates for the preprint.