"-phase_bam" doesn't work

WGLab / NanoCaller

Variant calling tool for long-read sequencing data

MIT License

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"-phase_bam" doesn't work #18

Closed moeinzadeh closed 2 years ago

moeinzadeh commented 2 years ago

The tag "-phase_bam" doesn't work. It looks it gets removed in the cleaning because the 'bam.bai' file exist. However one can use "-keep_bam" works instead

umahsn commented 2 years ago

Hi,

Thank you for pointing this out. I have fixed this issue in the latest commit so now if you set --phase_bam, you don't need to use --keep_bam additionally.