WGLab / NanoRepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
MIT License
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Support for data from the R10 flowcells #12

Closed Y-Pei closed 7 months ago

Y-Pei commented 7 months ago

Hi,

As the R9 flowcells are soon be discontinued by ONT, I was wondering would there be any support for the R10 flowcells in the future for NanoRepeat?

Many thanks!

kaichop commented 7 months ago

it supports sequence data generated from R10 flowcell.

On Thu, May 2, 2024 at 4:21 AM Y-Pei @.***> wrote:

Hi,

As the R9 flowcells are soon be discontinued by ONT, I was wondering would there be any support for the R10 flowcells in the future for NanoRepeat?

Many thanks!

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Y-Pei commented 7 months ago

The description of the -d doesn't seem to have an option for R10 though?

fangli80 commented 7 months ago

Please use -d ont_q20 if your read accuracy is Q20+ or above.