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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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gender prediction #10

Closed kaichop closed 6 years ago

kaichop commented 8 years ago

Given a list of samples, some of which have unknown gender, it should predict gender automatically and produce calls for all samples.

kaichop commented 6 years ago

If sex for a sample is not provided in sexfile, or if --sexfile is not specified, PennCNV will try to predict the gender of the sample, based on BAF heterozgous rate (fraction of chrX markers with BAF between 0.25 and 0.75) of >0.1 (female) or \<0.1 (male).