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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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Processing the same coordinates on Illumina OmniExpressExomeBeadChip #112

Open aburayaki opened 9 months ago

aburayaki commented 9 months ago

I am trying to detect CNVs using SNP arrays obtained with the Illumina OmniExpressExomeBeadChip.

In doing so, there are multiple probes with the same coordinates on the Illumina OmniExpressExomeBeadChip, should I perform any processing on them?

If removing duplicates or other processing would lead to more accurate CNV calling, I would be interested to know how to do.

It would be great if you could you could tell me.