search

WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
Other
88 stars 53 forks source link

Missing files in lib folder? #23

Closed KristinaKeuper closed 6 years ago

KristinaKeuper commented 6 years ago

I try to use PennCNV for SNP array analysis/ CNV detection. But I miss some files, following the documentation. The documentation says: "In PennCNV, the hhall.hg18.pfb, hhall.hmm and hhall.hg18.gcmodel files have been provided in the lib/ folder. "

Also the 3 files for hh550 should be there I guess. But I only find the .hmm files. Did you remove them? And where can I download these files?

kaichop commented 6 years ago

You can use hhall.hmm for HMM model. The hh550 array and hg18 genome coordinate are no longer used today, and you can prepare these files yourself following instructions in the website.

On Tue, Mar 13, 2018 at 10:26 AM, KKeuper notifications@github.com wrote:

I try to use PennCNV for SNP array analysis/ CNV detection. But I miss some files, following the documentation. The documentation says: "In PennCNV, the hhall.hg18.pfb, hhall.hmm and hhall.hg18.gcmodel files have been provided in the lib/ folder. "

Also the 3 files for hh550 should be there I guess. But I only find the .hmm files. Did you remove them? And where can I download these files?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/WGLab/PennCNV/issues/23, or mute the thread https://github.com/notifications/unsubscribe-auth/AFptuCyWd-GTC_QrzAnv6yKljuZ4emEKks5td9cGgaJpZM4Sox2p .