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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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WF gc model #24

Closed m-gall closed 5 years ago

m-gall commented 6 years ago

Dear Dr Wang,

I am working with an Infinium Oncoarray-500k dataset (hg19 reference). I was considering applying a correction on the waviness factor, as my WF values exceed 0.04. Do you know if there are gc models available which might be suitable for this array type?

Kind regards, Mailie

kaichop commented 6 years ago

you can use cal_gc_model.pl program yourself to generate a gcmodel file.

On Wed, Apr 11, 2018 at 11:23 PM, m-gall notifications@github.com wrote:

Dear Dr Wang,

I am working with an Infinium Oncoarray-500k dataset (hg19 reference). I was considering applying a correction on the waviness factor, as my WF values exceed 0.04. Do you know if there are gc models available which might be suitable for this array type?

Kind regards, Mailie

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