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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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RuntimeError Usage: fisher_exact_2sided #42

Open vbruat opened 5 years ago

vbruat commented 5 years ago

Hi,

I'm trying to run a CNV case-control comparison with detect_cnv.pl -cctest and I've got the following error: RuntimeError Usage: fisher_exact_2sided(a,b,c,d); at detect_cnv.pl line 1246, line 576

Can you help me with this error? Thanks. Vanessa.

kaichop commented 5 years ago

This function is C code and it looks like a compilation error. Try recompile the source code (make clean, make).

On Fri, May 10, 2019 at 3:01 PM vbruat notifications@github.com wrote:

Hi,

I'm trying to run a CNV case-control comparison with detect_cnv.pl -cctest and I've got the following error: RuntimeError Usage: fisher_exact_2sided(a,b,c,d); at detect_cnv.pl line 1246, line 576

Can you help me with this error? Thanks. Vanessa.

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vbruat commented 5 years ago

Thanks, it works now.