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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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for cyto-snp-850k, which hmml analysis is more appropriate? #66

Open heweihuang opened 3 years ago

kaichop commented 3 years ago

hhall.hmm should work since it is Illumina array.

On Tue, Feb 2, 2021 at 1:13 AM heweihuang notifications@github.com wrote:

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kaichop commented 3 years ago

what does standard product mean? what does result mean?

On Mon, Feb 8, 2021 at 6:11 AM heweihuang notifications@github.com wrote:

hhall.hmm should work since it is Illumina array. … <#m-397112108597572095> On Tue, Feb 2, 2021 at 1:13 AM heweihuang @.***> wrote: — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#66 https://github.com/WGLab/PennCNV/issues/66>, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNG3OABORB7H3KXO4CE6GDS46J2BANCNFSM4W6BOLGQ .

I tried using hhall.hmm, and the data of the standard product obtained is quite different from the result

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