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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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Documentation links to two different docker images #87

Open DanielEWeeks opened 2 years ago

DanielEWeeks commented 2 years ago

The documentation links to two different docker images:

1) https://hub.docker.com/r/romanhaa/penncnv/, which was updated 2 years ago

and

2) https://hub.docker.com/r/genomicslab/penncnv, which was updated 3 months ago.

As the second one appears to be more up-to-date and complete, probably would be better to drop the link to the older Docker image.

Also, regarding the second one, the pull command suggested on the main page doesn't work, I guess because it is expecting a branch tagged 'latest':

$ docker pull genomicslab/penncnv
Using default tag: latest
Error response from daemon: manifest for genomicslab/penncnv:latest not found: manifest unknown: manifest unknown

I was able to pull it using the tag label:

docker run -it -v `pwd`:/mounted genomicslab/penncnv:1.0.5

Thank you, Dan Weeks

kaichop commented 1 year ago

Thank you! The first link is dropped since it is a bit outdated. I also added the command with the tag as an example command.

On Sun, Jun 5, 2022 at 4:23 PM Daniel E. Weeks @.***> wrote:

The documentation links to two different docker images:

  1. https://hub.docker.com/r/romanhaa/penncnv/, which was updated 2 years ago

and

  1. https://hub.docker.com/r/genomicslab/penncnv, which was updated 3 months ago.

As the second one appears to be more up-to-date and complete, probably would be better to drop the link to the older Docker image.

Also, regarding the second one, the pull command suggested on the main page doesn't work, I guess because it is expecting a branch tagged 'latest':

$ docker pull genomicslab/penncnv Using default tag: latest Error response from daemon: manifest for genomicslab/penncnv:latest not found: manifest unknown: manifest unknown

I was able to pull it using the tag label:

docker run -it -v pwd:/mounted genomicslab/penncnv:1.0.5

Thank you, Dan Weeks

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