input file format - Githubissues

WGLab / Phen2Gene

Phenotype driven gene prioritization for HPO

MIT License

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input file format #20

Closed luckysummer closed 3 years ago

luckysummer commented 4 years ago

How can I use the input file with phenotype terms extracted manually to run the Phen2Gene process? if I use the EHR-phenotype to convert the term to HPO ID, which is different from the phenolyzer's input ?

jimhavrilla commented 4 years ago

Can you give me some more details? Maybe some example files or code you tried to run?

jimhavrilla commented 3 years ago

Well, it has been some time with no response, so I will close this issue. I will say the the README shows the only necessary input to Phen2Gene is a file or string of HPO IDs. I will re-open this issue if you are interested again in the future.