Can you please update the link in the setup.sh file
from: https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar
to: https://www.openbioinformatics.org/PhenoSV/PhenosvlightFile.tar?
Currently, regardless of whether the 'light' option is specified, the link is the same.
Thanks :smile:
Code excerpt
```bash
if [[ -z "$version" ]]
then
if ! test -f "$fpath/PhenosvFile.tar"; then
echo "downloading PhenoSV files........"
wget https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar
fi
echo "unzipping PhenosvFile.tar........"
tar -xvf "$fpath/PhenosvFile.tar"
rm "$fpath/PhenosvFile.tar"
else
if ! test -f "$fpath/PhenosvlightFile.tar"; then
echo "downloading PhenoSV-light files........"
wget https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar # <------- OFFENDING LINE
fi
echo "unzipping PhenosvlightFile.tar........"
tar -xvf "$fpath/PhenosvlightFile.tar"
rm "$fpath/PhenosvlightFile.tar"
fi
```
Thanks for this helpful tool :grinning:
Can you please update the link in the
setup.sh
file from:https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar
to:https://www.openbioinformatics.org/PhenoSV/PhenosvlightFile.tar
?Currently, regardless of whether the 'light' option is specified, the link is the same.
Thanks :smile:
Code excerpt
```bash if [[ -z "$version" ]] then if ! test -f "$fpath/PhenosvFile.tar"; then echo "downloading PhenoSV files........" wget https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar fi echo "unzipping PhenosvFile.tar........" tar -xvf "$fpath/PhenosvFile.tar" rm "$fpath/PhenosvFile.tar" else if ! test -f "$fpath/PhenosvlightFile.tar"; then echo "downloading PhenoSV-light files........" wget https://www.openbioinformatics.org/PhenoSV/PhenosvFile.tar # <------- OFFENDING LINE fi echo "unzipping PhenosvlightFile.tar........" tar -xvf "$fpath/PhenosvlightFile.tar" rm "$fpath/PhenosvlightFile.tar" fi ```