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WGLab / PhenoSV

PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
MIT License
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Annotation Script Bug #7

Closed JakeHagen closed 5 months ago

JakeHagen commented 5 months ago

On line 30 of annotation.py you have:

feature_files, scaler_file, _, elements_path, annotation_path, tad_path, _ = list(configs.values())

I think it should be 

feature_files, scaler_file, _, elements_path, annotation_path, tad_path, _, _ = list(configs.values())

to ignore feature_subset. When making this change it seems to work as expected

Karenxzr commented 5 months ago

Thank you for pinpointing the bug! Fixed it now.