WGLab / RepeatHMM

a hidden Markov model to infer simple repeats from genome sequences
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add reminder for installation #22

Open liutiming opened 5 years ago

huangyuanf commented 3 years ago

hello ,when using the following command: /lustre/huangyf/software/Miniconda3/envs/repeathmmenv/bin/python "/lustre/huangyf/software/RepeatHMM/bin/repeatHMM.py" FASTQinput --fastq "/lustre/huangyf/ont.fastq.data/20190329-BNP0832-P4-A1.pass.fastq" --hgfile "/lustre/huangyf/genome/hg38/hg38.fa" --repeatName all --Patternfile "/lustre/huangyf/software/RepeatHMM/bin/reference_sts/hg38/hg38.predefined.pa"

i find erro information as following: ('Error no information for 0\nError no information for 1\nError no information for 2\nError no information for 3\nError no information for 4\n', ['', '', '', '', '', '', ''], 'all')

could you help me

liuqianhn commented 3 years ago

@huangyuanf Since it is a same issue, please I will reply it at issue #40.