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WGLab / RepeatHMM

a hidden Markov model to infer simple repeats from genome sequences
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error with commonOptions (Illumina) #45

Open davidlougheed opened 2 years ago

davidlougheed commented 2 years ago

Hello, I think there's a typo here: https://github.com/WGLab/RepeatHMM/blob/b52cd31f883ab20694d22b5800c31c58f08c837e/bin/RepeatHMM_scripts/myGaussianMixtureModel.py#L143

I think commonOptions should be lowercase like in the args (otherwise it triggers an error)

liuqianhn commented 2 years ago

@davidlougheed Yes. You are right. Thank you very much for pointing this out.