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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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CNV annotations. #133

Open kghimire09 opened 3 years ago

kghimire09 commented 3 years ago

Hi I have a vcf with CNV (copy number variants) generated from CNVnator and I want to annotate it as gene-based. Could you please help me with this?

Thank you

kaichop commented 3 years ago

you can just use "chr start end 0 0" as the first five column and annotate it, since the exact ref/alt is not known.

On Thu, May 6, 2021 at 10:27 AM kghimire @.***> wrote:

Hi I have a vcf with CNV (copy number variants) generated from CNVnator and I want to annotate it as gene-based. Could you please help me with this?

Thank you

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kghimire09 commented 3 years ago

Thank you for your quick response. Will the annotating data and the code be the same for CNV as they will be for SNP/INDELS?