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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Unable to download a number of files #148

Open lwtan90 opened 3 years ago

lwtan90 commented 3 years ago

Hi,

I would like to download a number of files suggested in the tutorial. Eg. gnomad_exome. However, I got error message.

Command: annotate_variation.pl -downdb gnomad_exome humandb/ -build hg19

Error:

NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gnomad_exome.txt.gz ... Failed
WARNING: Some files cannot be downloaded, including http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gnomad_exome.txt.gz

Thank you.

lwtan90 commented 3 years ago

The version of my ANNOVAR:

Version: $Date: 2020-06-07 23:56:37 -0400 (Sun, 7 Jun 2020) $

kaichop commented 3 years ago

you should add -webfrom annovar in the command line. Also the latest version is v221 (check download page to find version information)

On Tue, Jun 22, 2021 at 9:00 PM lwtan90 @.***> wrote:

Hi,

I would like to download a number of files suggested in the tutorial. Eg. gnomad_exome. However, I got error message.

Command: annotate_variation.pl -downdb gnomad_exome humandb/ -build hg19

Error:

NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done NOTICE: Downloading annotation database http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gnomad_exome.txt.gz ... Failed WARNING: Some files cannot be downloaded, including http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/gnomad_exome.txt.gz

Thank you.

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