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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Suggestion to add the number of mutated exon/the number of total exons of a gene. #151

Closed lincj1994 closed 3 years ago

lincj1994 commented 3 years ago

Hi. I dont know if it is possible fo ANNOVAR to add the number of mutated exon/the number of total exons of a gene in the output to predict NMD escape. Lin.

kaichop commented 3 years ago

The output includes the exon number for each transcript. You need to calculate the number of total exon for each transcript yourself (from hg19_refGene.txt file), and then check whether that exon is the last exon or not.

On Tue, Jul 13, 2021 at 11:06 AM Caijin Lin @.***> wrote:

Hi. I dont know if it is possible fo ANNOVAR to add the number of mutated exon/the number of total exons of a gene in the output to predict NMD escape. Lin.

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