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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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how to get ENSG id using annovar annotation #175

Open stroke1989 opened 2 years ago

stroke1989 commented 2 years ago

Hi, I used annovar to annoate my WES data sucessfully, but the output did not generate ENSG id, instead, it generated ENST id. How can I got ENSG id. Hope your response! Appreciate!

kaichop commented 2 years ago

You can follow instructions here https://annovar.openbioinformatics.org/en/latest/user-guide/gene/#switching-to-gencodeccds-gene-annotation

Ensembl is replaced by GENCODE now.

On Thu, Jan 13, 2022 at 1:15 PM stroke1989 @.***> wrote:

Hi, I used annovar to annoate my WES data sucessfully, but the output did not generate ENSG id, instead, it generated ENST id. How can I got ENSG id. Hope your response! Appreciate!

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