WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Error running system command: <annotate_variation.pl -geneanno -buildver genome -dbtype refGene -outfile chr7_2_1.refGene -exonsort chr7_2.avinput ../../../annovar/chr7_2/> #184

Open Jiangjiangzhang6 opened 2 years ago

Jiangjiangzhang6 commented 2 years ago

Hello. my friend; I annotated the specia chromosome, named chr7_2, and craeted the database only for this chromosome, when run the table_annovar.pl , the commod was "table_annovar.pl chr7_2.avinput ../../../annovar/chr7_2/ --buildver genome --outfile chr7_2_1 --protocol refGene --operation g", the bug show “Error running system command: <annotate_variation.pl -geneanno -buildver genome -dbtype refGene -outfile chr7_2_1.refGene -exonsort chr7_2.avinput ../../../annovar/chr7_2/>” image

Jiangjiangzhang6 commented 2 years ago

image this was the database