Hello. my friend; I annotated the specia chromosome, named chr7_2, and craeted the database only for this chromosome, when run the table_annovar.pl ,
the commod was "table_annovar.pl chr7_2.avinput ../../../annovar/chr7_2/ --buildver genome --outfile chr7_2_1 --protocol refGene --operation g",
the bug show “Error running system command: <annotate_variation.pl -geneanno -buildver genome -dbtype refGene -outfile chr7_2_1.refGene -exonsort chr7_2.avinput ../../../annovar/chr7_2/>”
Hello. my friend; I annotated the specia chromosome, named chr7_2, and craeted the database only for this chromosome, when run the table_annovar.pl , the commod was "table_annovar.pl chr7_2.avinput ../../../annovar/chr7_2/ --buildver genome --outfile chr7_2_1 --protocol refGene --operation g", the bug show “Error running system command: <annotate_variation.pl -geneanno -buildver genome -dbtype refGene -outfile chr7_2_1.refGene -exonsort chr7_2.avinput ../../../annovar/chr7_2/>”![image](https://user-images.githubusercontent.com/101324838/161939555-325dfb3e-cadf-4e88-be57-010d3ca6a024.png)