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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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rmsk annotation source cant be downloaded #201

Open yangyxt opened 2 years ago

yangyxt commented 2 years ago

This rmsk annotation source is required by InterVar. However it seems no longer available ?

I tried to download with command: perl annotate_variation.pl --downdb --webfrom annovar -buildver hg19 rmsk ./humandb/ But failed with error message looks like this: image Pls suggest solutions here?

kaichop commented 2 years ago

This is a ucsc database, so you need to delete "-webfrom annovar". Also, you may want to update the ANNOVAR version.

On Tue, Aug 23, 2022 at 7:17 AM yxt @.***> wrote:

This rmsk annotation source is required by InterVar. However it seems no longer available ?

I tried to download with command: perl annotate_variation.pl --downdb --webfrom annovar -buildver hg19 rmsk ./humandb/ But failed with error message looks like this: [image: image] https://user-images.githubusercontent.com/40780228/186144731-cf3ddbce-1262-4eba-8b1d-4d1da339d1bd.png Pls suggest solutions here?

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yangyxt commented 2 years ago

Dear Dr Wang,

Thank you very much! I tried and successfully download the annotation resource. I'll update the ANNOVAR later.