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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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how to get the transcription start site? #214

Closed caiji-lh closed 1 year ago

caiji-lh commented 1 year ago

Hi, Dr. Wang,

  1. I want to get the information of transcription start site in the output file. I tried many parameters and failed. How should I get this information?
  2. I annotate the information of the CpG island through the "cpgIslandExt.txt". I want to add the location information of the corresponding CpG island in the output file.
kaichop commented 1 year ago

I did not understand the question so did not reply. Is the problem resolved? The gene-annotation output should have something like c. and p. which means the start site of mutation within the transcripts or translated proteins.

On Thu, Feb 23, 2023 at 9:41 PM caiji-lh @.***> wrote:

Closed #214 https://github.com/WGLab/doc-ANNOVAR/issues/214 as completed.

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