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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Cannot able to download annotations from annovar #227

Closed akhilpampana closed 9 months ago

akhilpampana commented 9 months ago

hello, I am trying to update my database to the newest version in annovar and I couldn't able to download the files needed for the upgrade. Can you able to help me with this?

kaichop commented 9 months ago

which one are you referring to ? what is the command line and error message?

On Tue, Sep 26, 2023 at 2:42 PM AkhilP @.***> wrote:

hello, I am trying to update my database to the newest version in annovar and I couldn't able to download the files needed for the upgrade. Can you able to help me with this?

— Reply to this email directly, view it on GitHub https://github.com/WGLab/doc-ANNOVAR/issues/227, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNG3OEEADCAC3H3SS72XWTX4MO3BANCNFSM6AAAAAA5IFPRCA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

akhilpampana commented 9 months ago

Hello, I am trying to download the latest clinvar annotations and the download failed. Here is the code I used and warning message

perl annotate_variation.pl -buildver hg38 -downdb -webfrom annovar clinvar annot_dir/
NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_clinvar.txt.gz ... Failed
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_clinvar.txt.idx.gz ... Failed
WARNING: Some files cannot be downloaded, including http://www.openbioinformatics.org/annovar/download/hg38_clinvar.txt.idx.gz, http://www.openbioinformatics.org/annovar/download/hg38_clinvar.txt.gz
akhilpampana commented 9 months ago

May I know how to resolve this issue?

akhilpampana commented 9 months ago

Thank you it was resolved by adding date to the file name.