Hi
Is there a way of getting the zygosity included as an output column at the table_annotate stage with vcf as input, instead of first doing convert2annovar.pl -withzyg argument to get .avinput file, and then using the new .avinput file and table_annovar.pl and -otherinfo argument?
Preferably would be going from VCF to CSV
Thanks!
Fiona
Hi Is there a way of getting the zygosity included as an output column at the table_annotate stage with vcf as input, instead of first doing convert2annovar.pl -withzyg argument to get .avinput file, and then using the new .avinput file and table_annovar.pl and -otherinfo argument? Preferably would be going from VCF to CSV Thanks! Fiona