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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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how can I download /humandb/hg19_ALL.sites.2014_10.txt file througth ANNOVAR #255

Open nanu4github opened 2 months ago

nanu4github commented 2 months ago

Thanks for your useful tools! There is a error which occurred when I running table_annovar.pl. And I will be really grateful if you tell me how to download this file, cause I try but it failed. error goes like: Error: the required database file /Data_MJY/hhl/software/annovar/humandb/hg19_ALL.sites.2014_10.txt does not exist. my code to download: annotate_variation.pl -buildver hg19 -downdb -webfrom annovar ALL.sites.2014_10 humandb/ download error: NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done NOTICE: Downloading annotation database /annovar/download/hg19_ALL.sites.2014_10.txt.gz ... Failed NOTICE: Downloading annotation database /annovar/download/hg19_ALL.sites.2014_10.txt.idx.gz ... Failed WARNING: Some files cannot be downloaded, including /download/hg19_ALL.sites.2014_10.txt.idx.gz, /download/hg19_ALL.sites.2014_10.txt.gz

kaichop commented 2 months ago

The dbtype should 1000g2015aug

Please also read FAQ #4 at https://annovar.openbioinformatics.org/en/latest/misc/faq/

On Mon, Sep 23, 2024 at 10:13 PM nanu4github @.***> wrote:

Thanks for your useful tools! There is a error which occurred when I running table_annovar.pl. And I will be really grateful if you tell me how to download this file, cause I try but it failed. error goes like: Error: the required database file /Data_MJY/hhl/software/annovar/humandb/hg19_ALL.sites.2014_10.txt does not exist. my code to download: annotate_variation.pl -buildver hg19 -downdb -webfrom annovar ALL.sites.2014_10 humandb/ download error: NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done NOTICE: Downloading annotation database /annovar/download/hg19_ALL.sites.2014_10.txt.gz ... Failed NOTICE: Downloading annotation database /annovar/download/hg19_ALL.sites.2014_10.txt.idx.gz ... Failed WARNING: Some files cannot be downloaded, including /download/hg19_ALL.sites.2014_10.txt.idx.gz, /download/hg19_ALL.sites.2014_10.txt.gz

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