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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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downdb of snp135NonFlagged: not works #85

Open Shicheng-Guo opened 4 years ago

Shicheng-Guo commented 4 years ago

Dear Dr. Wang,

the following command not works:

annotate_variation.pl -downdb -buildver hg38 -webfrom annovar snp135NonFlagged ~/hpc/tools/annovar/humandb/

while buildver hg19 work perfect:

annotate_variation.pl -downdb -buildver hg19 -webfrom annovar snp135NonFlagged ~/hpc/tools/annovar/humandb/

Any solution?

Thanks.

Shicheng

kaichop commented 4 years ago

use avsnp and use a later version. snp135 is very much outdated.

On Sat, Jan 11, 2020 at 1:14 AM Shicheng Guo notifications@github.com wrote:

Dear Dr. Wang,

the following command not works:

annotate_variation.pl -downdb -buildver hg38 -webfrom annovar snp135NonFlagged ~/hpc/tools/annovar/humandb/

while buildver hg19 work perfect:

annotate_variation.pl -downdb -buildver hg19 -webfrom annovar snp135NonFlagged ~/hpc/tools/annovar/humandb/

Any solution?

Thanks.

Shicheng

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