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WHOIGit
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domdb
DOM mass spec database prototype
MIT License
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wiki: needs description for database side of installation
#65
redbluewater
closed
9 years ago
1
update dependencies wiki page
#64
joefutrelle
opened
9 years ago
2
Psql
#63
joefutrelle
closed
9 years ago
0
wiki installation instructions need updating
#62
redbluewater
closed
9 years ago
2
'samples' command should not include 'ignore' attribute
#61
joefutrelle
closed
9 years ago
1
setting `int_over_controls` to zero is allowed, but crashes queries
#60
joefutrelle
closed
9 years ago
0
"match" is slow
#59
joefutrelle
closed
9 years ago
1
"search" is slow
#58
joefutrelle
closed
9 years ago
4
'match' returns samples with '0' as intensity
#57
redbluewater
closed
9 years ago
7
'set int_over_controls None' returns error
#56
redbluewater
closed
9 years ago
1
can exclude controls even without setting attrs
#55
redbluewater
closed
9 years ago
8
set with_ms2 is ignored
#54
redbluewater
closed
9 years ago
1
"remove" is slow
#53
joefutrelle
opened
9 years ago
3
cli crashes if "samples" is not given an argument
#52
joefutrelle
closed
9 years ago
0
Invalid mode ('wu')
#51
joefutrelle
closed
9 years ago
3
update new cli.py to access positive or negative ion mode database
#50
redbluewater
closed
9 years ago
3
include 'withMS2' in query output
#49
redbluewater
closed
9 years ago
0
Malformed CSV data
#48
joefutrelle
opened
9 years ago
2
export parameters
#47
redbluewater
closed
9 years ago
5
Mac vs. PC CSV files
#46
redbluewater
closed
9 years ago
6
add Vagrantfile for development environment
#45
joefutrelle
closed
9 years ago
0
list_attr should not list 'ignore' as attribute
#44
redbluewater
closed
9 years ago
5
remove is broken
#43
redbluewater
closed
9 years ago
0
Attrs
#42
joefutrelle
closed
9 years ago
0
list available attributes and values
#41
joefutrelle
closed
9 years ago
1
exclude by attr should exclude entire metabolite, not just samples
#40
joefutrelle
closed
9 years ago
0
exclude_controls finds '1 match' and then produces empty file
#39
redbluewater
closed
9 years ago
0
exclude_controls should remove the entire metabolite from a given experiment
#38
redbluewater
closed
9 years ago
12
Refactor control
#37
joefutrelle
closed
9 years ago
0
Class
#36
joefutrelle
closed
9 years ago
0
add error handling
#35
joefutrelle
closed
9 years ago
0
Add the ability to generate a query that will exclude features found in the controls
#34
joefutrelle
closed
9 years ago
3
Find the 'top 100' metabolites
#33
joefutrelle
opened
9 years ago
10
Include identification metadata in query output
#32
joefutrelle
closed
9 years ago
1
Add the ability to track whether MS2 data are available for a given feature
#31
joefutrelle
closed
9 years ago
2
allow user to add all data with one command
#30
joefutrelle
closed
9 years ago
1
Document dependencies
#29
joefutrelle
closed
9 years ago
4
readline check fails on Windows
#28
redbluewater
closed
9 years ago
9
update wiki doc for CLI
#27
joefutrelle
closed
9 years ago
0
Zero-like intensities in output. A problem?
#26
joefutrelle
closed
9 years ago
2
list now fails on empty database
#25
joefutrelle
closed
9 years ago
1
Mac tab completion
#24
joefutrelle
closed
9 years ago
0
autocomplete does not work in Mac OS
#23
joefutrelle
closed
9 years ago
3
experiments ignored in query output if metadata does not match data
#22
redbluewater
closed
9 years ago
4
wrong metadata in results
#21
joefutrelle
closed
9 years ago
17
metadata columns getting reordered/sorted
#20
redbluewater
closed
9 years ago
6
crashes when it cannot find a data file
#19
redbluewater
closed
9 years ago
6
CLI should do something reasonable when given bad parameters
#18
joefutrelle
closed
9 years ago
1
support autocomplete for experiment names in CLI
#17
joefutrelle
closed
9 years ago
0
Will eventually need to link the MS2 spectra for each metabolite
#16
redbluewater
opened
9 years ago
0
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