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WHOIGit / nes-lter-fish-diet

Northeast US shelf fish diet packages prepared for EDI
MIT License
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Issues reported by EML assembly line after initial outline of workflow run #2

Closed joefutrelle closed 2 years ago

joefutrelle commented 2 years ago

EML assembly line reports the following upon attempting make_eml:

issues()

Data table attributes (Concat_Count_EDI.csv, Required) - Data table attributes will be dropped from the EML until these issues are fixed:

  1. Mising attribute names. These attributes are listed in the data but not the metadata: V1.
  2. Undefined units. Units must be from the EML standard unit dictionary or defined as custom units. The units of these attributes are undefined: prey_mm, forkLength
  3. Incomplete missing value code/definition pairs. Each missing value must have a missing value code definition and vise versa. These attributes are missing one or the other: preyNum, preyTaxa, preySpp, Ocularunits, Mag, prey_mm, preyCount, forkLength, BEGIN_GMT_TOWDATE, Llopiz_taxa, scientificNameID_preyTaxon, scientificName_preyTaxon, scientificName_Rank

Data table attributes (Concat_Count_EDI.csv, Optional):

  1. Inaccurate classes. These attributes are classified as 'numeric' but in the data contain character strings other than those listed as missing value codes in the data and will therefore be reclassified as 'character': FishNum
joefutrelle commented 2 years ago

All issues have been addressed.