Error when trying to attach MMA hardware and setting files to one particular image in OMERO.

[JSDLacoste]

I am working on the CBI-Omero instance, which has the MMA plugin installed. The attached screenshots are the errors I get when I attempt to do this linking. I tried with two different images (IDs 8371 and 8145). @stephenogg, @atykwonderland, is it possible for you to access the server and check the actual path of the images? Can you track where are those files? @Akramhar would need to find out if it is a configuration problem of MMA, or something else (e.g. related to Omero version situation).

[stephenogg]

Image with ID 8371

The web client reports this file to be at: judithlacoste_552/2022-10/14/18-48-56.721/CHUM_CR_R12802_SDTIRF_coreg_2018_05_04_mai_40X_fovB.czi

SSH to the server and listing the files to get ownership and permissions at that location gives me this:

@.***:/OMERO/ManagedRepository/judithlacoste_552/2022-10/14/18-48-56.721$ ls -lsh total 403M 403M -rw-rw-r-- 1 omero-server managed_repo_group 403M Oct 14 2022 CHUM_CR_R12802_SDTIRF_coreg_2018_05_04_mai_40X_fovB.czi

Image with ID 8145

The web client reports this file to be at: judithlacoste_552/2022-10/07/13-23-22.256/CHUM_CR_sdTIRF_2020_04_09_Green_fwhm_100X_emccd_fovB.czi

SSH to the server and listing the files to get ownership and permissions at that location gives me this:

@.***:/OMERO/ManagedRepository/judithlacoste_552/2022-10/07/13-23-22.256$ ls -lsh total 51M 51M -rw-rw-r-- 1 omero-server managed_repo_group 51M Oct 7 2022 CHUM_CR_sdTIRF_2020_04_09_Green_fwhm_100X_emccd_fovB.czi

@Judith @.***> is this the information you require?

Best, Steve

From: Judith LACOSTE @.> Date: Wednesday, 13 December 2023 at 21:56 To: WU-BIMAC/MicroMetaApp-Omero @.> Cc: Stephen C. Ogg @.>, Mention @.> Subject: [EXTERNAL] [WU-BIMAC/MicroMetaApp-Omero] Error when trying to attach MMA hardware and setting files to one particular image in OMERO. (Issue #44)

I am working on the CBI-Omero instance, which has the MMA plugin installed. The attached screenshots are the errors I get when I attempt to do this linking. I tried with two different images (IDs 8371 and 8145). @stephenogghttps://urldefense.com/v3/__https:/github.com/stephenogg__;!!Nmw4Hv0!xOb3F6Urw_lcnUX11PHIEm1ihtHs4RQk5t-orLBTwF_hzNuaTU6Khg0x-KssbuHKrb-Zu6Jix05fKFMdrwZDSEqcMgerAm8$, @atykwonderlandhttps://urldefense.com/v3/__https:/github.com/atykwonderland__;!!Nmw4Hv0!xOb3F6Urw_lcnUX11PHIEm1ihtHs4RQk5t-orLBTwF_hzNuaTU6Khg0x-KssbuHKrb-Zu6Jix05fKFMdrwZDSEqcEjEiqjE$, is it possible for you to access the server and check the actual path of the images? Can you track where are those files? @Akramharhttps://urldefense.com/v3/__https:/github.com/Akramhar__;!!Nmw4Hv0!xOb3F6Urw_lcnUX11PHIEm1ihtHs4RQk5t-orLBTwF_hzNuaTU6Khg0x-KssbuHKrb-Zu6Jix05fKFMdrwZDSEqc-Uo_oy0$ would need to find out if it is a configuration problem of MMA, or something else (e.g. related to Omero version situation).

— Reply to this email directly, view it on GitHubhttps://urldefense.com/v3/__https:/github.com/WU-BIMAC/MicroMetaApp-Omero/issues/44__;!!Nmw4Hv0!xOb3F6Urw_lcnUX11PHIEm1ihtHs4RQk5t-orLBTwF_hzNuaTU6Khg0x-KssbuHKrb-Zu6Jix05fKFMdrwZDSEqcE6BqdOU$, or unsubscribehttps://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/AN6I42JORIL5JO4BDMA35NLYJH25TAVCNFSM6AAAAABATUXQCSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGA2DAMRZGMYTSNI__;!!Nmw4Hv0!xOb3F6Urw_lcnUX11PHIEm1ihtHs4RQk5t-orLBTwF_hzNuaTU6Khg0x-KssbuHKrb-Zu6Jix05fKFMdrwZDSEqcbQOd5eg$. You are receiving this because you were mentioned.Message ID: @.***>

[Akramhar]

@JSDLacoste I think the screenshot is missing. @stephenogg yes, thank you very much.

In both cases the plugin report the image to be @ ./ManagedRepository/path-to-the-image and it should be working inside the OMERO directory. Once Judith attaches the screenshot I can double check the path returned by the plugin and see if there is any major difference.

[JSDLacoste]

[JSDLacoste]

Thanks a lot @stephenogg and @Akramhar, let me know if there is anything else I can do.